Primary Outcome(s)
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Weight for Height over time in children aged 1-60 months
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Fraction of conjunctival swabs yielding ocular chlamydia in children 1-60 months
[Time Frame: 24 months]
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Height over time in children aged 1-60 months
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Prevalence of macrolide resistance in the stool as determined by genetic determinants or phenotypic testing
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Fraction of isolates of pneumococcus exhibiting macrolide resistance by nasopharyngeal swabs in children 1-60 months
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 36 months]
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Presence of malaria parasites on thick blood smear or Rapid Diagnostic Test (RDT) in children 1-60 months
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Secondary Outcome(s)
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Density of asexual stages and gametocytes, in children 1-60 months
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Hemoglobin concentration and presence of anemia (hemoglobin <11 g/dL) in children 1-60 months
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Nasopharyngeal pneumococcal macrolide resistance determinants (eg erythromycin ribosomal methylase B and mefA), serotype, and multilocus sequence type in children 1-60 months
[Time Frame: 24 months]
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Prevalence of carriage of a panel of gastrointestinal parasites (Ancylostoma duodenale, Necator americanus, Ascaris lumbricoides, Trichuris trichiura, Giardia lamblia, Cryptosporidium hominis) of children aged 1-60 months
[Time Frame: Baseline]
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Studies of intestinal permeability and inflammation, microbial translocation, and immune activation assessed through urine samples for L:M ratios of children 6 months
[Time Frame: 5 x over 24 weeks after baseline]
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Antibody response to enteric pathogens and malaria measured with a multiplex bead assay from dried blood spots collected from children 1 - 59 months
[Time Frame: Niger will report outcomes at 36, 48 and 60 months]
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Head circumference over time in children aged 1-60 months
[Time Frame: 24 months]
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Microbial diversity in the intestinal microbiomes of children aged 1-60 months as measured by using next generation sequencing
[Time Frame: 24 months]
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Proportions of E. coli isolates resistant to macrolides and to antibiotics commonly used to treat pediatric infections among children 1-60 months hospitalized for pneumonia and diarrhea.
[Time Frame: 6-24 months after baseline]
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Genetic determinants of macrolide resistance in the nasopharynx (eg pneumococcal) in individuals 7-12 years of age
[Time Frame: 24 months]
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Presence of the trachoma grades "follicular trachoma" (TF) and "intense inflammatory trachoma" (TI), as defined by the World Health Organization (WHO) simplified grading system, in children 1-60 months
[Time Frame: 24 months]
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Rates of diarrhea among children (1-60 months)
[Time Frame: 6-24 months after baseline]
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Nasopharyngeal pneumococcal evidence of beta lactam and macrolide resistance in in children 1-60 months as measured by RNA-sequencing of the resistome
[Time Frame: Tanzania will report outcomes at 6-24 months. Each site will report outcomes at 24 months; Niger will also report outcomes at 36 months]
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Proportion of rectal/stool isolates with evidence of resistance (in for example E.coli) to macrolides and other antibiotics commonly used to treat pediatric infections among children 1-60 months
[Time Frame: 6-24 months after baseline; Niger will also report outcomes at 48 months]
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Studies of intestinal permeability and inflammation, microbial translocation, and immune activation assessed through venous sampling of children 6 months
[Time Frame: 5 x over 24 weeks after baseline]
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Rates of acute respiratory illness among children 1-60 months.
[Time Frame: 6-24 months after baseline]
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Resistance (in E.coli phenotypically or genetic determinants) in stool of children aged 1-60 months.
[Time Frame: Each site will report outcomes at 24 months; Niger will also report outcomes at 48 months]
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Microbiome in the stool, nasopharynx, nares, and conjunctiva in children aged 1-59 months, as measured using next generation sequencing. Arms will be compared using Euclidean distance and diversity compared using Simpson's index.
[Time Frame: 24 months]
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Genetic determinants of macrolide resistance in the nasopharynx (eg pneumococcal) in individuals 1-60 month olds seen in local health clinics for a respiratory complaint
[Time Frame: 24 months]
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Prevalence of helicobacter pylori of children aged 1-60 months
[Time Frame: Baseline]
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Serology for exposure to exotic pathogens of children aged 1-60 months as measured by lateral flow assays or Multiplex bead array
[Time Frame: 24 months]
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Studies of intestinal permeability and inflammation, microbial translocation, and immune activation assessed through stool (fecal neopterin) of children 6 months
[Time Frame: 5 x over 24 weeks after baseline]
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Knee-heel length over time in children aged 1-60 months
[Time Frame: 24 months]
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